Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2290031..2290113 Replicon chromosome
Accession NZ_CP024710
Organism Dickeya solani strain IFB0223

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2290033..2290113 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2290031..2290113 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CTB91_RS10335 2285895..2286992 - 1098 WP_022633455.1 HDOD domain-containing protein -
CTB91_RS10340 2286983..2288098 - 1116 WP_022633456.1 sensor histidine kinase -
CTB91_RS10345 2288091..2289215 - 1125 WP_022633457.1 FIST C-terminal domain-containing protein -
CTB91_RS10350 2289582..2289812 + 231 WP_198560147.1 aminopeptidase -
- 2290031..2290113 + 83 - - Antitoxin
- 2290033..2290113 - 81 - - Toxin
CTB91_RS10355 2290283..2290621 - 339 WP_022633458.1 YebY family protein -
CTB91_RS10360 2291140..2291583 + 444 WP_022633459.1 hypothetical protein -
CTB91_RS10365 2291935..2292183 + 249 WP_022633460.1 GlsB/YeaQ/YmgE family stress response membrane protein -
CTB91_RS10370 2292300..2294042 - 1743 WP_022633461.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2283777..2292183 8406


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T88391 NZ_CP024710:c2290113-2290033 [Dickeya solani]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT88391 NZ_CP024710:2290031-2290113 [Dickeya solani]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References