Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2146329..2146474 | Replicon | chromosome |
| Accession | NZ_CP024707 | ||
| Organism | Klebsiella pneumoniae strain cr-hvkp3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2146365..2146467 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2146329..2146474 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTM43_RS10410 | 2141459..2143519 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CTM43_RS10415 | 2143523..2144182 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CTM43_RS10420 | 2144261..2144491 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CTM43_RS10425 | 2144604..2144978 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CTM43_RS10430 | 2144982..2145851 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| CTM43_RS10435 | 2145868..2146206 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2146329..2146474 | - | 146 | - | - | Antitoxin |
| - | 2146365..2146467 | + | 103 | - | - | Toxin |
| CTM43_RS28320 | 2146842..2146985 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CTM43_RS10445 | 2147090..2148058 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CTM43_RS10450 | 2148215..2148868 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| CTM43_RS10455 | 2148865..2149056 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CTM43_RS10460 | 2149154..2149393 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CTM43_RS10465 | 2149509..2150942 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T88368 NZ_CP024707:2146365-2146467 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT88368 NZ_CP024707:c2146474-2146329 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
