Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2088620..2088763 | Replicon | chromosome |
| Accession | NZ_CP024680 | ||
| Organism | Citrobacter freundii strain UMH14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2088625..2088728 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2088620..2088763 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC46_RS10245 | 2085810..2087198 | + | 1389 | WP_201750587.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CUC46_RS10250 | 2087299..2087535 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CUC46_RS10255 | 2087638..2087829 | + | 192 | WP_003034941.1 | YebW family protein | - |
| CUC46_RS10260 | 2087830..2088471 | - | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| - | 2088620..2088763 | + | 144 | - | - | Antitoxin |
| - | 2088625..2088728 | - | 104 | - | - | Toxin |
| CUC46_RS10265 | 2088884..2089222 | - | 339 | WP_003034934.1 | YebY family protein | - |
| CUC46_RS10270 | 2089243..2090115 | - | 873 | WP_121571827.1 | copper homeostasis membrane protein CopD | - |
| CUC46_RS10275 | 2090119..2090493 | - | 375 | WP_121571828.1 | CopC domain-containing protein YobA | - |
| CUC46_RS10280 | 2090637..2090867 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CUC46_RS10285 | 2090974..2091630 | + | 657 | WP_121571829.1 | carbon-nitrogen hydrolase family protein | - |
| CUC46_RS10290 | 2091654..2092316 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88320 NZ_CP024680:c2088728-2088625 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT88320 NZ_CP024680:2088620-2088763 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
