Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2143349..2143492 | Replicon | chromosome |
| Accession | NZ_CP024679 | ||
| Organism | Citrobacter freundii strain UMH15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2143354..2143457 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2143349..2143492 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC47_RS10580 | 2140539..2141927 | + | 1389 | WP_199991613.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CUC47_RS10585 | 2142028..2142264 | + | 237 | WP_161959422.1 | DUF1480 family protein | - |
| CUC47_RS10590 | 2142367..2142558 | + | 192 | WP_003034941.1 | YebW family protein | - |
| CUC47_RS10595 | 2142559..2143200 | - | 642 | WP_121540152.1 | protein-serine/threonine phosphatase | - |
| - | 2143349..2143492 | + | 144 | - | - | Antitoxin |
| - | 2143354..2143457 | - | 104 | - | - | Toxin |
| CUC47_RS10600 | 2143613..2143951 | - | 339 | WP_003833793.1 | YebY family protein | - |
| CUC47_RS10605 | 2143972..2144844 | - | 873 | WP_049002332.1 | copper homeostasis membrane protein CopD | - |
| CUC47_RS10610 | 2144848..2145222 | - | 375 | WP_121540153.1 | CopC domain-containing protein YobA | - |
| CUC47_RS10615 | 2145366..2145596 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CUC47_RS10620 | 2145703..2146359 | + | 657 | WP_121540154.1 | carbon-nitrogen hydrolase family protein | - |
| CUC47_RS10625 | 2146383..2147045 | + | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88304 NZ_CP024679:c2143457-2143354 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT88304 NZ_CP024679:2143349-2143492 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
