Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2240260..2240401 | Replicon | chromosome |
| Accession | NZ_CP024677 | ||
| Organism | Citrobacter freundii strain UMH16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2240263..2240366 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2240260..2240401 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC48_RS26295 | 2235537..2235752 | + | 216 | WP_057064237.1 | hypothetical protein | - |
| CUC48_RS11220 | 2235810..2236136 | + | 327 | WP_032944383.1 | Rrf2 family transcriptional regulator | - |
| CUC48_RS11225 | 2236278..2238749 | + | 2472 | WP_121581679.1 | exonuclease | - |
| CUC48_RS11230 | 2238813..2239073 | + | 261 | WP_072211989.1 | hypothetical protein | - |
| CUC48_RS11235 | 2239051..2240130 | + | 1080 | WP_121581681.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2240260..2240401 | + | 142 | - | - | Antitoxin |
| - | 2240263..2240366 | - | 104 | - | - | Toxin |
| CUC48_RS11240 | 2240522..2240860 | - | 339 | WP_003034934.1 | YebY family protein | - |
| CUC48_RS11245 | 2240881..2241753 | - | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| CUC48_RS11250 | 2241757..2242131 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| CUC48_RS11255 | 2242275..2242505 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CUC48_RS11260 | 2242612..2243268 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| CUC48_RS11265 | 2243292..2243954 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2190270..2246023 | 55753 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88283 NZ_CP024677:c2240366-2240263 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT88283 NZ_CP024677:2240260-2240401 [Citrobacter freundii]
GAGAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GAGAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
