Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1993501..1993711 | Replicon | chromosome |
| Accession | NZ_CP024676 | ||
| Organism | Citrobacter pasteurii strain UMH17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1993506..1993609 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1993501..1993711 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC49_RS09585 | 1988718..1988954 | + | 237 | WP_101742234.1 | DUF1480 family protein | - |
| CUC49_RS09590 | 1988982..1990220 | - | 1239 | WP_082759583.1 | MFS transporter | - |
| CUC49_RS09595 | 1990290..1991207 | + | 918 | WP_121584746.1 | LysR family transcriptional regulator | - |
| CUC49_RS09600 | 1991280..1991471 | + | 192 | WP_048211387.1 | YebW family protein | - |
| CUC49_RS09605 | 1991472..1992113 | - | 642 | WP_061068066.1 | protein-serine/threonine phosphatase | - |
| CUC49_RS09610 | 1992359..1993141 | - | 783 | WP_048211385.1 | HNH endonuclease | - |
| - | 1993501..1993711 | + | 211 | - | - | Antitoxin |
| - | 1993506..1993609 | - | 104 | - | - | Toxin |
| CUC49_RS09620 | 1993765..1994103 | - | 339 | WP_061068068.1 | YebY family protein | - |
| CUC49_RS09625 | 1994120..1994992 | - | 873 | WP_116359890.1 | copper homeostasis membrane protein CopD | - |
| CUC49_RS09630 | 1994996..1995370 | - | 375 | WP_044711069.1 | CopC domain-containing protein YobA | - |
| CUC49_RS09635 | 1995513..1995743 | + | 231 | WP_005120732.1 | DNA polymerase III subunit theta | - |
| CUC49_RS09640 | 1995850..1996506 | + | 657 | WP_061068070.1 | carbon-nitrogen hydrolase family protein | - |
| CUC49_RS09645 | 1996529..1997191 | + | 663 | WP_061068071.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1987196..1999272 | 12076 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88264 NZ_CP024676:c1993609-1993506 [Citrobacter pasteurii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 211 bp
>AT88264 NZ_CP024676:1993501-1993711 [Citrobacter pasteurii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
