Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2089989..2090129 | Replicon | chromosome |
| Accession | NZ_CP024675 | ||
| Organism | Citrobacter werkmanii strain UMH18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2089991..2090094 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2089989..2090129 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC50_RS10250 | 2085653..2087041 | + | 1389 | WP_199952218.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CUC50_RS10255 | 2087142..2087378 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CUC50_RS10260 | 2087481..2087672 | + | 192 | WP_032939629.1 | YebW family protein | - |
| CUC50_RS10265 | 2087673..2088314 | - | 642 | WP_087856062.1 | protein-serine/threonine phosphatase | - |
| CUC50_RS10270 | 2088388..2089668 | - | 1281 | WP_121529158.1 | hypothetical protein | - |
| - | 2089989..2090129 | + | 141 | - | - | Antitoxin |
| - | 2089991..2090094 | - | 104 | - | - | Toxin |
| CUC50_RS10275 | 2090250..2090588 | - | 339 | WP_121529159.1 | YebY family protein | - |
| CUC50_RS10280 | 2090609..2091481 | - | 873 | WP_069324700.1 | copper homeostasis membrane protein CopD | - |
| CUC50_RS10285 | 2091485..2091859 | - | 375 | WP_038641395.1 | CopC domain-containing protein YobA | - |
| CUC50_RS10290 | 2092003..2092233 | + | 231 | WP_121529160.1 | DNA polymerase III subunit theta | - |
| CUC50_RS10295 | 2092340..2092996 | + | 657 | WP_069324701.1 | carbon-nitrogen hydrolase family protein | - |
| CUC50_RS10300 | 2093019..2093681 | + | 663 | WP_038641401.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88250 NZ_CP024675:c2090094-2089991 [Citrobacter werkmanii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT88250 NZ_CP024675:2089989-2090129 [Citrobacter werkmanii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
