Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2063969..2064112 | Replicon | chromosome |
| Accession | NZ_CP024673 | ||
| Organism | Citrobacter freundii strain UMH19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2063974..2064077 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2063969..2064112 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC51_RS10225 | 2061159..2062547 | + | 1389 | WP_199852532.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CUC51_RS10230 | 2062648..2062884 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CUC51_RS10235 | 2062987..2063178 | + | 192 | WP_003034941.1 | YebW family protein | - |
| CUC51_RS10240 | 2063179..2063820 | - | 642 | WP_071697354.1 | protein-serine/threonine phosphatase | - |
| - | 2063969..2064112 | + | 144 | - | - | Antitoxin |
| - | 2063974..2064077 | - | 104 | - | - | Toxin |
| CUC51_RS10245 | 2064233..2064571 | - | 339 | WP_071696726.1 | YebY family protein | - |
| CUC51_RS10250 | 2064592..2065464 | - | 873 | WP_071696727.1 | copper homeostasis membrane protein CopD | - |
| CUC51_RS10255 | 2065468..2065842 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| CUC51_RS10260 | 2065986..2066216 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CUC51_RS10265 | 2066323..2066979 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| CUC51_RS10270 | 2067003..2067665 | + | 663 | WP_071696728.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88233 NZ_CP024673:c2064077-2063974 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT88233 NZ_CP024673:2063969-2064112 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
