Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1339903..1340171 | Replicon | chromosome |
| Accession | NZ_CP024659 | ||
| Organism | Escherichia coli strain RM9872-C1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1340030..1340133 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1339903..1340171 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUB84_RS06430 | 1336456..1337118 | - | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
| CUB84_RS06435 | 1337142..1337798 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| CUB84_RS06440 | 1337900..1338130 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CUB84_RS06445 | 1338269..1338643 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| CUB84_RS06450 | 1338647..1339519 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| CUB84_RS06455 | 1339532..1339873 | + | 342 | WP_000976475.1 | YebY family protein | - |
| - | 1339903..1340171 | - | 269 | - | - | Antitoxin |
| - | 1340030..1340133 | + | 104 | - | - | Toxin |
| CUB84_RS06460 | 1340268..1340924 | + | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| CUB84_RS06465 | 1340925..1341116 | - | 192 | WP_001313035.1 | YebW family protein | - |
| CUB84_RS06470 | 1341221..1341457 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CUB84_RS06475 | 1341575..1343014 | - | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88190 NZ_CP024659:1340030-1340133 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT88190 NZ_CP024659:c1340171-1339903 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
