Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 484815..485433 Replicon chromosome
Accession NZ_CP024659
Organism Escherichia coli strain RM9872-C1

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag CUB84_RS02240 Protein ID WP_001291435.1
Coordinates 484815..485033 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag CUB84_RS02245 Protein ID WP_000344800.1
Coordinates 485059..485433 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CUB84_RS02205 480104..480676 + 573 WP_000779831.1 YbaY family lipoprotein -
CUB84_RS02210 480707..481018 - 312 WP_000409911.1 MGMT family protein -
CUB84_RS02220 481397..481750 + 354 WP_000878140.1 DUF1428 domain-containing protein -
CUB84_RS02225 481792..483342 - 1551 WP_024221674.1 cyclic-guanylate-specific phosphodiesterase PdeB -
CUB84_RS02230 483506..483976 - 471 WP_000136192.1 YlaC family protein -
CUB84_RS02235 484092..484643 - 552 WP_000102564.1 maltose O-acetyltransferase -
CUB84_RS02240 484815..485033 - 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
CUB84_RS02245 485059..485433 - 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
CUB84_RS02250 485979..489128 - 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
CUB84_RS02255 489151..490344 - 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T88189 WP_001291435.1 NZ_CP024659:c485033-484815 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T88189 NZ_CP024659:c485033-484815 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT88189 WP_000344800.1 NZ_CP024659:c485433-485059 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp

>AT88189 NZ_CP024659:c485433-485059 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACTCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References