Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1850777..1851045 Replicon chromosome
Accession NZ_CP024650
Organism Escherichia coli strain BH100 substr. MG2014

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1850815..1850917 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1850777..1851045 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CDW44_RS09600 1847935..1849374 + 1440 WP_001298454.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
CDW44_RS09605 1849491..1849727 + 237 WP_001295499.1 DUF1480 family protein -
CDW44_RS09610 1849832..1850023 + 192 WP_001296140.1 YebW family protein -
CDW44_RS09615 1850024..1850680 - 657 WP_000812743.1 protein-serine/threonine phosphatase -
- 1850777..1851045 + 269 - - Antitoxin
- 1850815..1850917 - 103 - - Toxin
CDW44_RS09620 1851075..1851416 - 342 WP_000984819.1 YebY family protein -
CDW44_RS09625 1851429..1852301 - 873 WP_000879311.1 copper homeostasis membrane protein CopD -
CDW44_RS09630 1852305..1852679 - 375 WP_000168747.1 CopC domain-containing protein YobA -
CDW44_RS09635 1852818..1853048 + 231 WP_000916763.1 DNA polymerase III subunit theta -
CDW44_RS09640 1853151..1853807 + 657 WP_000011644.1 carbon-nitrogen hydrolase family protein -
CDW44_RS09645 1853831..1854493 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T88158 NZ_CP024650:c1850917-1850815 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT88158 NZ_CP024650:1850777-1851045 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References