Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2347601..2348051 Replicon chromosome
Accession NZ_CP024646
Organism Pseudomonas syringae isolate inb918

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CT157_RS10595 Protein ID WP_127797547.1
Coordinates 2347601..2347870 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CT157_RS10600 Protein ID WP_127800840.1
Coordinates 2347860..2348051 (-) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CT157_RS10545 2342810..2343283 + 474 WP_007956136.1 type II secretion system GspH family protein -
CT157_RS10550 2343289..2343663 + 375 WP_011333435.1 type II secretion system GspH family protein -
CT157_RS10555 2343638..2344189 + 552 WP_127797540.1 type II secretion system GspH family protein -
CT157_RS10560 2344186..2344578 + 393 WP_127797541.1 curli production assembly/transport protein CsgE -
CT157_RS10565 2344575..2345006 + 432 WP_127797542.1 curli production assembly protein CsgF -
CT157_RS10570 2345036..2345896 + 861 WP_085607704.1 curli production assembly/transport protein CsgG -
CT157_RS10580 2346708..2347088 + 381 WP_127797544.1 hypothetical protein -
CT157_RS10585 2347162..2347389 + 228 WP_127797545.1 antitoxin -
CT157_RS10595 2347601..2347870 - 270 WP_127797547.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CT157_RS10600 2347860..2348051 - 192 WP_127800840.1 antitoxin Antitoxin
CT157_RS10605 2348333..2349784 - 1452 WP_127797548.1 curlin -
CT157_RS10610 2349811..2350275 - 465 WP_007956150.1 curlin -
CT157_RS10615 2350375..2352609 - 2235 WP_127797549.1 cadherin-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10286.82 Da        Isoelectric Point: 9.4341

>T88144 WP_127797547.1 NZ_CP024646:c2347870-2347601 [Pseudomonas syringae]
MQFEWQPEARAEFLHILDYISDRNFKAANKLSNAIEAATVTLTKHPHLYRVGRTPGTREMVVHPNYLLIYQAVGRINILG
VVHARQEYP

Download         Length: 270 bp

>T88144 NZ_CP024646:c2347870-2347601 [Pseudomonas syringae]
ATGCAGTTTGAGTGGCAGCCCGAAGCTCGGGCTGAATTCCTGCACATTCTTGACTACATCAGTGACCGTAATTTCAAAGC
GGCTAACAAGCTTTCAAACGCTATCGAAGCCGCCACGGTTACCCTTACCAAACATCCACACCTCTATCGAGTGGGGCGAA
CTCCCGGCACTCGTGAGATGGTCGTACATCCCAACTACCTGCTCATTTACCAAGCGGTGGGCCGGATAAATATTCTGGGC
GTTGTGCACGCACGTCAGGAATATCCGTGA

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7086.18 Da        Isoelectric Point: 4.6094

>AT88144 WP_127800840.1 NZ_CP024646:c2348051-2347860 [Pseudomonas syringae]
MIDPLCPVVSDLGPEEQAASYDRWLIAKIQASMNDPRPSIPNDQVMAEMHALMEAKRKKYDAV

Download         Length: 192 bp

>AT88144 NZ_CP024646:c2348051-2347860 [Pseudomonas syringae]
TTGATCGACCCACTGTGCCCGGTTGTTTCGGATCTTGGTCCTGAGGAACAGGCTGCGAGTTATGACCGTTGGTTGATCGC
CAAAATACAAGCTTCCATGAATGACCCACGTCCGAGCATTCCTAATGATCAGGTGATGGCCGAAATGCATGCCCTGATGG
AAGCAAAGCGTAAAAAATACGATGCAGTTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References