Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 603085..603253 | Replicon | chromosome |
| Accession | NZ_CP024643 | ||
| Organism | Klebsiella michiganensis strain F107 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 603143..603246 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 603085..603253 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHQ91_RS05380 | 598212..600272 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| CHQ91_RS05385 | 600279..600938 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| CHQ91_RS05390 | 601017..601247 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| CHQ91_RS05395 | 601383..601757 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| CHQ91_RS05400 | 601762..602631 | + | 870 | WP_025106130.1 | copper homeostasis membrane protein CopD | - |
| CHQ91_RS05405 | 602648..602986 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 603085..603253 | - | 169 | - | - | Antitoxin |
| - | 603143..603246 | + | 104 | - | - | Toxin |
| CHQ91_RS05410 | 603371..604330 | - | 960 | WP_047723552.1 | spore coat U domain-containing protein | - |
| CHQ91_RS05415 | 604345..606675 | - | 2331 | WP_064377677.1 | fimbrial biogenesis outer membrane usher protein | - |
| CHQ91_RS05420 | 606678..607442 | - | 765 | WP_049102470.1 | molecular chaperone | - |
| CHQ91_RS05425 | 607461..607979 | - | 519 | WP_161505350.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88125 NZ_CP024643:603143-603246 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT88125 NZ_CP024643:c603253-603085 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
