Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 603085..603253 Replicon chromosome
Accession NZ_CP024643
Organism Klebsiella michiganensis strain F107

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 603143..603246 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 603085..603253 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CHQ91_RS05380 598212..600272 + 2061 WP_033836507.1 oligopeptidase B -
CHQ91_RS05385 600279..600938 - 660 WP_014229839.1 exodeoxyribonuclease X -
CHQ91_RS05390 601017..601247 - 231 WP_004103351.1 DNA polymerase III subunit theta -
CHQ91_RS05395 601383..601757 + 375 WP_014229838.1 CopC domain-containing protein YobA -
CHQ91_RS05400 601762..602631 + 870 WP_025106130.1 copper homeostasis membrane protein CopD -
CHQ91_RS05405 602648..602986 + 339 WP_004103344.1 YebY family protein -
- 603085..603253 - 169 - - Antitoxin
- 603143..603246 + 104 - - Toxin
CHQ91_RS05410 603371..604330 - 960 WP_047723552.1 spore coat U domain-containing protein -
CHQ91_RS05415 604345..606675 - 2331 WP_064377677.1 fimbrial biogenesis outer membrane usher protein -
CHQ91_RS05420 606678..607442 - 765 WP_049102470.1 molecular chaperone -
CHQ91_RS05425 607461..607979 - 519 WP_161505350.1 spore coat U domain-containing protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T88125 NZ_CP024643:603143-603246 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 169 bp

>AT88125 NZ_CP024643:c603253-603085 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References