Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) parDE/ParE-YefM
Location 1428107..1428652 Replicon chromosome
Accession NZ_CP024627
Organism Vibrio coralliilyticus strain SCSIO 43001

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag CTT30_RS06895 Protein ID WP_252036463.1
Coordinates 1428107..1428403 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A7X8YLC8
Locus tag CTT30_RS06900 Protein ID WP_005526987.1
Coordinates 1428410..1428652 (-) Length 81 a.a.

Genomic Context


CTT30_RS06850CTT30_RS06855CTT30_RS06860CTT30_RS06865CTT30_RS06870CTT30_RS06875CTT30_RS06880CTT30_RS06885CTT30_RS06890CTT30_RS06910CTT30_RS06915CTT30_RS06895CTT30_RS06900CTT30_RS06920CTT30_RS06925
Location: 1423875..1424129 (255 bp)
Type: Others
Protein ID: WP_252036457.1
Location: 1424122..1424391 (270 bp)
Type: Others
Protein ID: WP_252036458.1
Location: 1424570..1424884 (315 bp)
Type: Others
Protein ID: WP_252036459.1
Location: 1425441..1425593 (153 bp)
Type: Others
Protein ID: WP_252036460.1
Location: 1425594..1426358 (765 bp)
Type: Others
Protein ID: WP_252036619.1
Location: 1426376..1426465 (90 bp)
Type: Others
Protein ID: WP_239871702.1
Location: 1426493..1426762 (270 bp)
Type: Others
Protein ID: WP_252036461.1
Location: 1426907..1427326 (420 bp)
Type: Others
Protein ID: WP_252036358.1
Location: 1427450..1427935 (486 bp)
Type: Others
Protein ID: WP_252036462.1
Location: 1430471..1430614 (144 bp)
Type: Others
Protein ID: WP_252036465.1
Location: 1430633..1430863 (231 bp)
Type: Others
Protein ID: WP_252036466.1
Location: 1428107..1428403 (297 bp)
Type: Toxin
Protein ID: WP_252036463.1
Location: 1428410..1428652 (243 bp)
Type: Antitoxin
Protein ID: WP_005526987.1
Location: 1431085..1432425 (1341 bp)
Type: Others
Protein ID: WP_252036467.1
Location: 1432464..1432901 (438 bp)
Type: Others
Protein ID: WP_252036468.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CTT30_RS06850 (CTT30_06885)1423875..1424129+255WP_252036457.1type II toxin-antitoxin system prevent-host-death family antitoxin-
CTT30_RS06855 (CTT30_06890)1424122..1424391+270WP_252036458.1Txe/YoeB family addiction module toxin-
CTT30_RS068601424570..1424884+315WP_252036459.1hypothetical protein-
CTT30_RS068651425441..1425593+153WP_252036460.1hypothetical protein-
CTT30_RS06870 (CTT30_06900)1425594..1426358+765WP_252036619.1PhzF family phenazine biosynthesis protein-
CTT30_RS068751426376..1426465+90WP_239871702.1DUF3265 domain-containing protein-
CTT30_RS06880 (CTT30_06910)1426493..1426762+270WP_252036461.1hypothetical protein-
CTT30_RS06885 (CTT30_06915)1426907..1427326+420WP_252036358.1hypothetical protein-
CTT30_RS06890 (CTT30_06920)1427450..1427935+486WP_252036462.1GNAT family N-acetyltransferase-
CTT30_RS06895 (CTT30_06925)1428107..1428403-297WP_252036463.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CTT30_RS06900 (CTT30_06930)1428410..1428652-243WP_005526987.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
CTT30_RS069101430471..1430614+144WP_252036465.1hypothetical protein-
CTT30_RS069151430633..1430863+231WP_252036466.1hypothetical protein-
CTT30_RS06920 (CTT30_06945)1431085..1432425-1341WP_252036467.1BspA family leucine-rich repeat surface protein-
CTT30_RS06925 (CTT30_06950)1432464..1432901-438WP_252036468.1BspA family leucine-rich repeat surface protein-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideGenomic island--1303146..1429994126848
-insideIntegron--1302139..1428858126719


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 99 a.a.        Molecular weight: 11249.88 Da        Isoelectric Point: 9.8450

>T88109 WP_252036463.1 NZ_CP024627:c1428403-1428107 [Vibrio coralliilyticus]
MQKNKYKLSKLAQTHLRKIKSYTVNNFSETQWRSYKDTLLTGFQMLADNPAVGRSCDDIYPSGFYFPVGKHTAYFTKEDG
FILVVAILGQSQLPQNHL

Download         Length: 297 bp

>T88109 NZ_CP024627:c1428403-1428107 [Vibrio coralliilyticus]
ATGCAAAAGAACAAATACAAACTGAGTAAATTAGCTCAGACTCATTTACGGAAAATCAAAAGCTATACTGTTAACAACTT
CTCCGAGACCCAGTGGCGAAGCTATAAAGATACGTTACTAACTGGTTTTCAAATGCTTGCTGATAATCCAGCTGTTGGTC
GCAGTTGTGATGACATATACCCAAGCGGGTTCTATTTCCCTGTGGGCAAGCATACCGCTTATTTTACAAAAGAGGATGGC
TTCATTTTAGTTGTAGCTATACTCGGTCAATCACAGCTTCCTCAGAACCACTTATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8974.16 Da        Isoelectric Point: 4.7914

>AT88109 WP_005526987.1 NZ_CP024627:c1428652-1428410 [Vibrio coralliilyticus]
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDAVVVMSIKDYEELEAMKTDYLKHCFESAKQDLAQGNVVDGEDFLNAL

Download         Length: 243 bp

>AT88109 NZ_CP024627:c1428652-1428410 [Vibrio coralliilyticus]
ATGCACACATTAACAGCAAATGATGCCAAACGTAATTTTGGTGAGCTACTTCTAAGCGCCCAACGTGAGCCTGTGAAGAT
TAGCAAAAACAGTAAAGATGCCGTCGTTGTAATGTCTATCAAGGACTATGAAGAACTAGAAGCAATGAAAACCGATTACC
TTAAGCACTGTTTCGAGTCAGCGAAACAAGACTTAGCTCAAGGAAATGTGGTTGATGGTGAAGACTTTTTAAACGCCTTA
TAA

Similar Proteins


Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures


Toxin

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Source
ID
Structure
No matching records found


Antitoxin

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Source
ID
Structure
AlphaFold DBA0A7X8YLC8

References