Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/ParE-YefM |
Location | 1428107..1428652 | Replicon | chromosome |
Accession | NZ_CP024627 | ||
Organism | Vibrio coralliilyticus strain SCSIO 43001 |
Toxin (Protein)
Gene name | parE | Uniprot ID | - |
Locus tag | CTT30_RS06895 | Protein ID | WP_252036463.1 |
Coordinates | 1428107..1428403 (-) | Length | 99 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | A0A7X8YLC8 |
Locus tag | CTT30_RS06900 | Protein ID | WP_005526987.1 |
Coordinates | 1428410..1428652 (-) | Length | 81 a.a. |
Genomic Context
Location: 1423875..1424129 (255 bp)
Type: Others
Protein ID: WP_252036457.1
Type: Others
Protein ID: WP_252036457.1
Location: 1424122..1424391 (270 bp)
Type: Others
Protein ID: WP_252036458.1
Type: Others
Protein ID: WP_252036458.1
Location: 1424570..1424884 (315 bp)
Type: Others
Protein ID: WP_252036459.1
Type: Others
Protein ID: WP_252036459.1
Location: 1425441..1425593 (153 bp)
Type: Others
Protein ID: WP_252036460.1
Type: Others
Protein ID: WP_252036460.1
Location: 1425594..1426358 (765 bp)
Type: Others
Protein ID: WP_252036619.1
Type: Others
Protein ID: WP_252036619.1
Location: 1426376..1426465 (90 bp)
Type: Others
Protein ID: WP_239871702.1
Type: Others
Protein ID: WP_239871702.1
Location: 1426493..1426762 (270 bp)
Type: Others
Protein ID: WP_252036461.1
Type: Others
Protein ID: WP_252036461.1
Location: 1426907..1427326 (420 bp)
Type: Others
Protein ID: WP_252036358.1
Type: Others
Protein ID: WP_252036358.1
Location: 1427450..1427935 (486 bp)
Type: Others
Protein ID: WP_252036462.1
Type: Others
Protein ID: WP_252036462.1
Location: 1430471..1430614 (144 bp)
Type: Others
Protein ID: WP_252036465.1
Type: Others
Protein ID: WP_252036465.1
Location: 1430633..1430863 (231 bp)
Type: Others
Protein ID: WP_252036466.1
Type: Others
Protein ID: WP_252036466.1
Location: 1428107..1428403 (297 bp)
Type: Toxin
Protein ID: WP_252036463.1
Type: Toxin
Protein ID: WP_252036463.1
Location: 1428410..1428652 (243 bp)
Type: Antitoxin
Protein ID: WP_005526987.1
Type: Antitoxin
Protein ID: WP_005526987.1
Location: 1431085..1432425 (1341 bp)
Type: Others
Protein ID: WP_252036467.1
Type: Others
Protein ID: WP_252036467.1
Location: 1432464..1432901 (438 bp)
Type: Others
Protein ID: WP_252036468.1
Type: Others
Protein ID: WP_252036468.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CTT30_RS06850 (CTT30_06885) | 1423875..1424129 | + | 255 | WP_252036457.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
CTT30_RS06855 (CTT30_06890) | 1424122..1424391 | + | 270 | WP_252036458.1 | Txe/YoeB family addiction module toxin | - |
CTT30_RS06860 | 1424570..1424884 | + | 315 | WP_252036459.1 | hypothetical protein | - |
CTT30_RS06865 | 1425441..1425593 | + | 153 | WP_252036460.1 | hypothetical protein | - |
CTT30_RS06870 (CTT30_06900) | 1425594..1426358 | + | 765 | WP_252036619.1 | PhzF family phenazine biosynthesis protein | - |
CTT30_RS06875 | 1426376..1426465 | + | 90 | WP_239871702.1 | DUF3265 domain-containing protein | - |
CTT30_RS06880 (CTT30_06910) | 1426493..1426762 | + | 270 | WP_252036461.1 | hypothetical protein | - |
CTT30_RS06885 (CTT30_06915) | 1426907..1427326 | + | 420 | WP_252036358.1 | hypothetical protein | - |
CTT30_RS06890 (CTT30_06920) | 1427450..1427935 | + | 486 | WP_252036462.1 | GNAT family N-acetyltransferase | - |
CTT30_RS06895 (CTT30_06925) | 1428107..1428403 | - | 297 | WP_252036463.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
CTT30_RS06900 (CTT30_06930) | 1428410..1428652 | - | 243 | WP_005526987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
CTT30_RS06910 | 1430471..1430614 | + | 144 | WP_252036465.1 | hypothetical protein | - |
CTT30_RS06915 | 1430633..1430863 | + | 231 | WP_252036466.1 | hypothetical protein | - |
CTT30_RS06920 (CTT30_06945) | 1431085..1432425 | - | 1341 | WP_252036467.1 | BspA family leucine-rich repeat surface protein | - |
CTT30_RS06925 (CTT30_06950) | 1432464..1432901 | - | 438 | WP_252036468.1 | BspA family leucine-rich repeat surface protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | - | - | 1303146..1429994 | 126848 | |
- | inside | Integron | - | - | 1302139..1428858 | 126719 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11249.88 Da Isoelectric Point: 9.8450
>T88109 WP_252036463.1 NZ_CP024627:c1428403-1428107 [Vibrio coralliilyticus]
MQKNKYKLSKLAQTHLRKIKSYTVNNFSETQWRSYKDTLLTGFQMLADNPAVGRSCDDIYPSGFYFPVGKHTAYFTKEDG
FILVVAILGQSQLPQNHL
MQKNKYKLSKLAQTHLRKIKSYTVNNFSETQWRSYKDTLLTGFQMLADNPAVGRSCDDIYPSGFYFPVGKHTAYFTKEDG
FILVVAILGQSQLPQNHL
Download Length: 297 bp
>T88109 NZ_CP024627:c1428403-1428107 [Vibrio coralliilyticus]
ATGCAAAAGAACAAATACAAACTGAGTAAATTAGCTCAGACTCATTTACGGAAAATCAAAAGCTATACTGTTAACAACTT
CTCCGAGACCCAGTGGCGAAGCTATAAAGATACGTTACTAACTGGTTTTCAAATGCTTGCTGATAATCCAGCTGTTGGTC
GCAGTTGTGATGACATATACCCAAGCGGGTTCTATTTCCCTGTGGGCAAGCATACCGCTTATTTTACAAAAGAGGATGGC
TTCATTTTAGTTGTAGCTATACTCGGTCAATCACAGCTTCCTCAGAACCACTTATAA
ATGCAAAAGAACAAATACAAACTGAGTAAATTAGCTCAGACTCATTTACGGAAAATCAAAAGCTATACTGTTAACAACTT
CTCCGAGACCCAGTGGCGAAGCTATAAAGATACGTTACTAACTGGTTTTCAAATGCTTGCTGATAATCCAGCTGTTGGTC
GCAGTTGTGATGACATATACCCAAGCGGGTTCTATTTCCCTGTGGGCAAGCATACCGCTTATTTTACAAAAGAGGATGGC
TTCATTTTAGTTGTAGCTATACTCGGTCAATCACAGCTTCCTCAGAACCACTTATAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8974.16 Da Isoelectric Point: 4.7914
>AT88109 WP_005526987.1 NZ_CP024627:c1428652-1428410 [Vibrio coralliilyticus]
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDAVVVMSIKDYEELEAMKTDYLKHCFESAKQDLAQGNVVDGEDFLNAL
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDAVVVMSIKDYEELEAMKTDYLKHCFESAKQDLAQGNVVDGEDFLNAL
Download Length: 243 bp
>AT88109 NZ_CP024627:c1428652-1428410 [Vibrio coralliilyticus]
ATGCACACATTAACAGCAAATGATGCCAAACGTAATTTTGGTGAGCTACTTCTAAGCGCCCAACGTGAGCCTGTGAAGAT
TAGCAAAAACAGTAAAGATGCCGTCGTTGTAATGTCTATCAAGGACTATGAAGAACTAGAAGCAATGAAAACCGATTACC
TTAAGCACTGTTTCGAGTCAGCGAAACAAGACTTAGCTCAAGGAAATGTGGTTGATGGTGAAGACTTTTTAAACGCCTTA
TAA
ATGCACACATTAACAGCAAATGATGCCAAACGTAATTTTGGTGAGCTACTTCTAAGCGCCCAACGTGAGCCTGTGAAGAT
TAGCAAAAACAGTAAAGATGCCGTCGTTGTAATGTCTATCAAGGACTATGAAGAACTAGAAGCAATGAAAACCGATTACC
TTAAGCACTGTTTCGAGTCAGCGAAACAAGACTTAGCTCAAGGAAATGTGGTTGATGGTGAAGACTTTTTAAACGCCTTA
TAA
Structures
Toxin
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Source | ID | Structure |
---|---|---|
No matching records found |
Antitoxin
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Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7X8YLC8 |