Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2787856..2788001 | Replicon | chromosome |
| Accession | NZ_CP024570 | ||
| Organism | Klebsiella pneumoniae strain INF274 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2787863..2787965 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2787856..2788001 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTI69_RS14215 | 2783388..2784821 | + | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CTI69_RS14220 | 2784937..2785176 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CTI69_RS14225 | 2785274..2785465 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CTI69_RS14230 | 2785462..2786115 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CTI69_RS14235 | 2786272..2787240 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CTI69_RS29665 | 2787345..2787488 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2787856..2788001 | + | 146 | - | - | Antitoxin |
| - | 2787863..2787965 | - | 103 | - | - | Toxin |
| CTI69_RS14245 | 2788124..2788462 | - | 339 | WP_016529031.1 | YebY family protein | - |
| CTI69_RS14250 | 2788479..2789348 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| CTI69_RS14255 | 2789352..2789726 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CTI69_RS14260 | 2789839..2790069 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CTI69_RS14265 | 2790148..2790807 | + | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| CTI69_RS14270 | 2790811..2792871 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T88023 NZ_CP024570:c2787965-2787863 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT88023 NZ_CP024570:2787856-2788001 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
