Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1933201..1933346 | Replicon | chromosome |
| Accession | NZ_CP024556 | ||
| Organism | Klebsiella pneumoniae strain INF164 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1933237..1933339 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1933201..1933346 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTI75_RS09620 | 1928331..1930391 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CTI75_RS09625 | 1930395..1931054 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| CTI75_RS09630 | 1931133..1931363 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CTI75_RS09635 | 1931476..1931850 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CTI75_RS09640 | 1931854..1932723 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| CTI75_RS09645 | 1932740..1933078 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1933201..1933346 | - | 146 | - | - | Antitoxin |
| - | 1933237..1933339 | + | 103 | - | - | Toxin |
| CTI75_RS30255 | 1933714..1933857 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CTI75_RS09655 | 1933962..1934930 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CTI75_RS09660 | 1935087..1935740 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CTI75_RS09665 | 1935737..1935928 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CTI75_RS09670 | 1936026..1936265 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CTI75_RS09675 | 1936381..1937814 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T87980 NZ_CP024556:1933237-1933339 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT87980 NZ_CP024556:c1933346-1933201 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
