Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1926616..1926761 | Replicon | chromosome |
| Accession | NZ_CP024548 | ||
| Organism | Klebsiella pneumoniae strain KSB1_7J | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1926652..1926754 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1926616..1926761 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTI66_RS09695 | 1921746..1923806 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CTI66_RS09700 | 1923810..1924469 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CTI66_RS09705 | 1924548..1924778 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CTI66_RS09710 | 1924891..1925265 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CTI66_RS09715 | 1925269..1926138 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| CTI66_RS09720 | 1926155..1926493 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1926616..1926761 | - | 146 | - | - | Antitoxin |
| - | 1926652..1926754 | + | 103 | - | - | Toxin |
| CTI66_RS27020 | 1927129..1927272 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CTI66_RS09730 | 1927377..1928345 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CTI66_RS09735 | 1928502..1929155 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| CTI66_RS09740 | 1929152..1929343 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CTI66_RS09745 | 1929441..1929680 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CTI66_RS09750 | 1929796..1931229 | - | 1434 | WP_099755895.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T87940 NZ_CP024548:1926652-1926754 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT87940 NZ_CP024548:c1926761-1926616 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
