Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 4771824..4772340 Replicon chromosome
Accession NZ_CP024542
Organism Klebsiella pneumoniae strain INF042

Toxin (Protein)


Gene name relE Uniprot ID A0A486Q7B5
Locus tag CTI63_RS24025 Protein ID WP_004192395.1
Coordinates 4771824..4772108 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A483GCT9
Locus tag CTI63_RS24030 Protein ID WP_004192397.1
Coordinates 4772098..4772340 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CTI63_RS24005 4767241..4767549 - 309 WP_004192389.1 PTS sugar transporter subunit IIB -
CTI63_RS28775 4767634..4767807 + 174 WP_002886906.1 hypothetical protein -
CTI63_RS24010 4767810..4768553 + 744 WP_002886905.1 MurR/RpiR family transcriptional regulator -
CTI63_RS24015 4768910..4771048 + 2139 WP_004186701.1 anaerobic ribonucleoside-triphosphate reductase -
CTI63_RS24020 4771356..4771820 + 465 WP_004192393.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
CTI63_RS24025 4771824..4772108 - 285 WP_004192395.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CTI63_RS24030 4772098..4772340 - 243 WP_004192397.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
CTI63_RS24035 4772418..4774328 - 1911 WP_099729038.1 BglG family transcription antiterminator -
CTI63_RS24040 4774351..4775505 - 1155 WP_004178372.1 lactonase family protein -
CTI63_RS24045 4775572..4776312 - 741 WP_002886899.1 KDGP aldolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-80)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11184.03 Da        Isoelectric Point: 10.3787

>T87909 WP_004192395.1 NZ_CP024542:c4772108-4771824 [Klebsiella pneumoniae]
MTYELEFDPRAWREWQKPGETVKKQFKNKLQQIVQNPRIESTRLSDLPDCYKIKLKASGYRLVYQVRDSVVVVYVIAIGK
REKAAVYHQVNKRL

Download         Length: 285 bp

>T87909 NZ_CP024542:c4772108-4771824 [Klebsiella pneumoniae]
ATGACCTATGAACTGGAGTTTGATCCACGAGCCTGGCGCGAATGGCAGAAGCCTGGCGAGACGGTCAAAAAACAGTTCAA
AAATAAGCTCCAGCAGATTGTGCAGAATCCGCGAATTGAGTCGACCAGGCTGAGCGATTTACCGGATTGCTACAAAATCA
AGCTTAAGGCGTCAGGTTATCGGTTGGTGTATCAAGTACGAGATAGTGTGGTGGTGGTTTACGTTATTGCCATTGGCAAA
AGAGAGAAAGCGGCCGTTTATCATCAGGTGAATAAACGGCTCTAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9073.60 Da        Isoelectric Point: 6.3340

>AT87909 WP_004192397.1 NZ_CP024542:c4772340-4772098 [Klebsiella pneumoniae]
MATLNVRLDDKLKKEAYAVLEKLDMTPTEVVRLLFQYIAENGRMPVKSMTISDGEAALLRTVRERLENPRPGVKVSLDDL

Download         Length: 243 bp

>AT87909 NZ_CP024542:c4772340-4772098 [Klebsiella pneumoniae]
ATGGCCACGCTCAATGTTCGACTGGACGATAAACTCAAAAAAGAGGCTTATGCCGTGCTGGAGAAACTCGATATGACACC
AACGGAGGTGGTACGCCTGCTGTTTCAATACATTGCGGAAAATGGCCGCATGCCGGTGAAAAGTATGACCATCAGTGATG
GCGAAGCGGCGTTATTACGCACCGTTCGCGAACGGCTGGAAAACCCACGGCCGGGGGTTAAGGTGAGTCTGGATGACCTA
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A486Q7B5

Antitoxin

Source ID Structure
AlphaFold DB A0A483GCT9

References