Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 604402..604547 | Replicon | chromosome |
| Accession | NZ_CP024521 | ||
| Organism | Klebsiella pneumoniae strain INF158 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 604438..604540 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 604402..604547 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTI59_RS02850 | 599532..601592 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CTI59_RS02855 | 601596..602255 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| CTI59_RS02860 | 602334..602564 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CTI59_RS02865 | 602677..603051 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CTI59_RS02870 | 603055..603924 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| CTI59_RS02875 | 603941..604279 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 604402..604547 | - | 146 | - | - | Antitoxin |
| - | 604438..604540 | + | 103 | - | - | Toxin |
| CTI59_RS29850 | 604915..605058 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CTI59_RS02885 | 605163..606131 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CTI59_RS02890 | 606288..606941 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CTI59_RS02895 | 606938..607129 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CTI59_RS02900 | 607227..607466 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CTI59_RS02905 | 607582..609015 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T87829 NZ_CP024521:604438-604540 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT87829 NZ_CP024521:c604547-604402 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
