Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 1886097..1886242 | Replicon | chromosome |
Accession | NZ_CP024496 | ||
Organism | Klebsiella pneumoniae strain KSB1_7E |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 1886133..1886235 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 1886097..1886242 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CTI55_RS09395 | 1881227..1883287 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
CTI55_RS09400 | 1883291..1883950 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
CTI55_RS09405 | 1884029..1884259 | - | 231 | WP_040147502.1 | DNA polymerase III subunit theta | - |
CTI55_RS09410 | 1884372..1884746 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
CTI55_RS09415 | 1884750..1885619 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
CTI55_RS09420 | 1885636..1885974 | + | 339 | WP_002911404.1 | YebY family protein | - |
- | 1886097..1886242 | - | 146 | - | - | Antitoxin |
- | 1886133..1886235 | + | 103 | - | - | Toxin |
CTI55_RS27350 | 1886610..1886753 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
CTI55_RS09430 | 1886858..1887826 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
CTI55_RS09435 | 1887983..1888636 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
CTI55_RS09440 | 1888633..1888824 | - | 192 | WP_002911395.1 | YebW family protein | - |
CTI55_RS09445 | 1888922..1889161 | - | 240 | WP_002911393.1 | YebV family protein | - |
CTI55_RS09450 | 1889277..1890710 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T87813 NZ_CP024496:1886133-1886235 [Klebsiella pneumoniae]
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT87813 NZ_CP024496:c1886242-1886097 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT