Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1886097..1886242 Replicon chromosome
Accession NZ_CP024496
Organism Klebsiella pneumoniae strain KSB1_7E

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1886133..1886235 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1886097..1886242 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CTI55_RS09395 1881227..1883287 + 2061 WP_004151449.1 oligopeptidase B -
CTI55_RS09400 1883291..1883950 - 660 WP_002911407.1 exodeoxyribonuclease X -
CTI55_RS09405 1884029..1884259 - 231 WP_040147502.1 DNA polymerase III subunit theta -
CTI55_RS09410 1884372..1884746 + 375 WP_004151448.1 CopC domain-containing protein YobA -
CTI55_RS09415 1884750..1885619 + 870 WP_004175431.1 copper homeostasis membrane protein CopD -
CTI55_RS09420 1885636..1885974 + 339 WP_002911404.1 YebY family protein -
- 1886097..1886242 - 146 - - Antitoxin
- 1886133..1886235 + 103 - - Toxin
CTI55_RS27350 1886610..1886753 - 144 WP_002911398.1 Ecr family regulatory small membrane protein -
CTI55_RS09430 1886858..1887826 - 969 WP_004151446.1 VirK/YbjX family protein -
CTI55_RS09435 1887983..1888636 + 654 WP_032415192.1 protein-serine/threonine phosphatase -
CTI55_RS09440 1888633..1888824 - 192 WP_002911395.1 YebW family protein -
CTI55_RS09445 1888922..1889161 - 240 WP_002911393.1 YebV family protein -
CTI55_RS09450 1889277..1890710 - 1434 WP_032415191.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T87813 NZ_CP024496:1886133-1886235 [Klebsiella pneumoniae]
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT87813 NZ_CP024496:c1886242-1886097 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References