Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 185499..185770 | Replicon | chromosome |
| Accession | NZ_CP024479 | ||
| Organism | Escherichia coli strain 2011C-4315 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 185629..185732 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 185499..185770 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5958_RS01170 | 182054..182716 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| A5958_RS01175 | 182740..183396 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| A5958_RS01180 | 183498..183728 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A5958_RS01185 | 183867..184241 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| A5958_RS01190 | 184245..185117 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| A5958_RS01195 | 185130..185471 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 185499..185770 | - | 272 | - | - | Antitoxin |
| - | 185629..185732 | + | 104 | - | - | Toxin |
| A5958_RS01200 | 185867..186523 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| A5958_RS01205 | 186524..186715 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A5958_RS01210 | 186820..187056 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A5958_RS01215 | 187174..188613 | - | 1440 | WP_064460450.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87754 NZ_CP024479:185629-185732 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87754 NZ_CP024479:c185770-185499 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACATATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACATATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
