Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1061131..1061364 | Replicon | chromosome |
| Accession | NZ_CP024466 | ||
| Organism | Shigella dysenteriae strain BU53M1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1061261..1061364 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1061131..1061364 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ97_RS05860 | 1057686..1058348 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CPZ97_RS05865 | 1058372..1059028 | - | 657 | WP_000896381.1 | carbon-nitrogen hydrolase family protein | - |
| CPZ97_RS05870 | 1059130..1059360 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CPZ97_RS05875 | 1059499..1059873 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| CPZ97_RS05880 | 1059877..1060749 | + | 873 | WP_000879288.1 | copper homeostasis membrane protein CopD | - |
| CPZ97_RS05885 | 1060762..1061103 | + | 342 | WP_134802023.1 | YebY family protein | - |
| - | 1061131..1061364 | - | 234 | - | - | Antitoxin |
| - | 1061261..1061364 | + | 104 | - | - | Toxin |
| CPZ97_RS05890 | 1061486..1061926 | - | 441 | Protein_1103 | tyrosine-type recombinase/integrase | - |
| CPZ97_RS05900 | 1063205..1063901 | + | 697 | Protein_1105 | IS1 family transposase | - |
| CPZ97_RS05905 | 1064016..1064297 | - | 282 | WP_078164586.1 | excisionase | - |
| CPZ97_RS05915 | 1064449..1065144 | + | 696 | Protein_1107 | IS1-like element IS1N family transposase | - |
| CPZ97_RS05920 | 1065336..1065521 | + | 186 | WP_023637031.1 | hypothetical protein | - |
| CPZ97_RS05925 | 1065482..1065601 | + | 120 | WP_001131442.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87686 NZ_CP024466:1061261-1061364 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT87686 NZ_CP024466:c1061364-1061131 [Shigella dysenteriae]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
