Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2767825..2767970 | Replicon | chromosome |
| Accession | NZ_CP024458 | ||
| Organism | Klebsiella pneumoniae strain QS17-0161 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2767832..2767934 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2767825..2767970 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR231_RS13860 | 2763357..2764790 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CR231_RS13865 | 2764906..2765145 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CR231_RS13870 | 2765243..2765434 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CR231_RS13875 | 2765431..2766084 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| CR231_RS13880 | 2766241..2767209 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| CR231_RS28940 | 2767314..2767457 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2767825..2767970 | + | 146 | - | - | Antitoxin |
| - | 2767832..2767934 | - | 103 | - | - | Toxin |
| CR231_RS13890 | 2768093..2768431 | - | 339 | WP_002911404.1 | YebY family protein | - |
| CR231_RS13895 | 2768448..2769317 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| CR231_RS13900 | 2769321..2769695 | - | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| CR231_RS13905 | 2769808..2770038 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CR231_RS13910 | 2770117..2770776 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CR231_RS13915 | 2770780..2772840 | - | 2061 | WP_032419805.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T87665 NZ_CP024458:c2767934-2767832 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT87665 NZ_CP024458:2767825-2767970 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
