Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3295675..3295820 | Replicon | chromosome |
| Accession | NZ_CP024429 | ||
| Organism | Klebsiella pneumoniae strain DA48896 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3295682..3295784 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3295675..3295820 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKL84_RS16510 | 3291206..3292639 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BKL84_RS16515 | 3292755..3292994 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BKL84_RS16520 | 3293092..3293283 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BKL84_RS16525 | 3293280..3293933 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| BKL84_RS16530 | 3294090..3295058 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| BKL84_RS29400 | 3295163..3295306 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 3295675..3295820 | + | 146 | - | - | Antitoxin |
| - | 3295682..3295784 | - | 103 | - | - | Toxin |
| BKL84_RS16540 | 3295943..3296281 | - | 339 | WP_002911404.1 | YebY family protein | - |
| BKL84_RS16545 | 3296298..3297167 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| BKL84_RS16550 | 3297171..3297545 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| BKL84_RS16555 | 3297658..3297888 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BKL84_RS16560 | 3297967..3298626 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BKL84_RS16565 | 3298630..3300690 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T87638 NZ_CP024429:c3295784-3295682 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT87638 NZ_CP024429:3295675-3295820 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
