Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3563760..3563992 | Replicon | chromosome |
| Accession | NZ_CP024282 | ||
| Organism | Escherichia albertii strain 2014C-4356 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3563888..3563990 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3563760..3563992 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCF14_RS18200 | 3560691..3561353 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| CCF14_RS18205 | 3561377..3561589 | - | 213 | Protein_3338 | carbon-nitrogen hydrolase family protein | - |
| CCF14_RS18210 | 3561754..3561984 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| CCF14_RS18215 | 3562123..3562500 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| CCF14_RS18220 | 3562504..3563376 | + | 873 | WP_044708630.1 | copper homeostasis membrane protein CopD | - |
| CCF14_RS18225 | 3563389..3563730 | + | 342 | WP_000976487.1 | YebY family protein | - |
| - | 3563760..3563992 | - | 233 | - | - | Antitoxin |
| - | 3563888..3563990 | + | 103 | - | - | Toxin |
| CCF14_RS18235 | 3565734..3566054 | + | 321 | WP_099588026.1 | hypothetical protein | - |
| CCF14_RS18240 | 3566127..3567584 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T87534 NZ_CP024282:3563888-3563990 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT87534 NZ_CP024282:c3563992-3563760 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
