Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1658653..1658924 | Replicon | chromosome |
| Accession | NZ_CP024278 | ||
| Organism | Escherichia coli strain ATCC 43896 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1658783..1658886 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1658653..1658924 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS031_RS08705 | 1655208..1655870 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CS031_RS08710 | 1655894..1656550 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CS031_RS08715 | 1656652..1656882 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CS031_RS08720 | 1657021..1657395 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CS031_RS08725 | 1657399..1658271 | + | 873 | WP_096974526.1 | copper homeostasis membrane protein CopD | - |
| CS031_RS08730 | 1658284..1658625 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1658653..1658924 | - | 272 | - | - | Antitoxin |
| - | 1658783..1658886 | + | 104 | - | - | Toxin |
| CS031_RS08735 | 1659021..1659677 | + | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| CS031_RS08740 | 1659678..1659869 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CS031_RS08745 | 1659974..1660210 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CS031_RS08750 | 1660328..1661767 | - | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87494 NZ_CP024278:1658783-1658886 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87494 NZ_CP024278:c1658924-1658653 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
