Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2002565..2002836 | Replicon | chromosome |
| Accession | NZ_CP024275 | ||
| Organism | Escherichia coli O6:H16 strain M9682-C1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2002603..2002706 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2002565..2002836 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG40_RS10470 | 1999722..2001161 | + | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| COG40_RS10475 | 2001279..2001515 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| COG40_RS10480 | 2001620..2001811 | + | 192 | WP_001338167.1 | YebW family protein | - |
| COG40_RS10485 | 2001812..2002468 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2002565..2002836 | + | 272 | - | - | Antitoxin |
| - | 2002603..2002706 | - | 104 | - | - | Toxin |
| COG40_RS10490 | 2002864..2003205 | - | 342 | WP_000976472.1 | YebY family protein | - |
| COG40_RS10495 | 2003218..2004090 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| COG40_RS10500 | 2004094..2004468 | - | 375 | WP_000168746.1 | CopC domain-containing protein YobA | - |
| COG40_RS10505 | 2004607..2004837 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| COG40_RS10510 | 2004939..2005595 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| COG40_RS10515 | 2005619..2006281 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87471 NZ_CP024275:c2002706-2002603 [Escherichia coli O6:H16]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87471 NZ_CP024275:2002565-2002836 [Escherichia coli O6:H16]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
