Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1993379..1993650 | Replicon | chromosome |
| Accession | NZ_CP024273 | ||
| Organism | Escherichia coli strain F9792 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1993417..1993520 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1993379..1993650 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5T63_RS10465 | 1990536..1991975 | + | 1440 | WP_001718410.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A5T63_RS10470 | 1992093..1992329 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A5T63_RS10475 | 1992434..1992625 | + | 192 | WP_001313035.1 | YebW family protein | - |
| A5T63_RS10480 | 1992626..1993282 | - | 657 | WP_001718411.1 | protein-serine/threonine phosphatase | - |
| - | 1993379..1993650 | + | 272 | - | - | Antitoxin |
| - | 1993417..1993520 | - | 104 | - | - | Toxin |
| A5T63_RS10485 | 1993678..1994019 | - | 342 | WP_000976472.1 | YebY family protein | - |
| A5T63_RS10490 | 1994032..1994904 | - | 873 | WP_001718412.1 | copper homeostasis membrane protein CopD | - |
| A5T63_RS10495 | 1994908..1995282 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| A5T63_RS10500 | 1995421..1995651 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A5T63_RS10505 | 1995753..1996409 | + | 657 | WP_001718413.1 | carbon-nitrogen hydrolase family protein | - |
| A5T63_RS10510 | 1996433..1997095 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87446 NZ_CP024273:c1993520-1993417 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87446 NZ_CP024273:1993379-1993650 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
