Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 673451..673722 | Replicon | chromosome |
| Accession | NZ_CP024269 | ||
| Organism | Escherichia coli strain F8111-1SC3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 673489..673592 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 673451..673722 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCV27_RS03560 | 670608..672047 | + | 1440 | WP_001718410.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CCV27_RS03565 | 672165..672401 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CCV27_RS03570 | 672506..672697 | + | 192 | WP_001313035.1 | YebW family protein | - |
| CCV27_RS03575 | 672698..673354 | - | 657 | WP_001718411.1 | protein-serine/threonine phosphatase | - |
| - | 673451..673722 | + | 272 | - | - | Antitoxin |
| - | 673489..673592 | - | 104 | - | - | Toxin |
| CCV27_RS03580 | 673750..674091 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CCV27_RS03585 | 674104..674976 | - | 873 | WP_001718412.1 | copper homeostasis membrane protein CopD | - |
| CCV27_RS03590 | 674980..675354 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CCV27_RS03595 | 675493..675723 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CCV27_RS03600 | 675825..676481 | + | 657 | WP_001718413.1 | carbon-nitrogen hydrolase family protein | - |
| CCV27_RS03605 | 676505..677167 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87421 NZ_CP024269:c673592-673489 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87421 NZ_CP024269:673451-673722 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
