Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1416271..1416542 | Replicon | chromosome |
| Accession | NZ_CP024263 | ||
| Organism | Escherichia coli O169:H41 strain F6326-C1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1416309..1416412 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1416271..1416542 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG38_RS07530 | 1413428..1414867 | + | 1440 | WP_001718410.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| COG38_RS07535 | 1414985..1415221 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| COG38_RS07540 | 1415326..1415517 | + | 192 | WP_001313035.1 | YebW family protein | - |
| COG38_RS07545 | 1415518..1416174 | - | 657 | WP_001718411.1 | protein-serine/threonine phosphatase | - |
| - | 1416271..1416542 | + | 272 | - | - | Antitoxin |
| - | 1416309..1416412 | - | 104 | - | - | Toxin |
| COG38_RS07550 | 1416570..1416911 | - | 342 | WP_000976472.1 | YebY family protein | - |
| COG38_RS07555 | 1416924..1417796 | - | 873 | WP_001718412.1 | copper homeostasis membrane protein CopD | - |
| COG38_RS07560 | 1417800..1418174 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| COG38_RS07565 | 1418313..1418543 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| COG38_RS07570 | 1418645..1419301 | + | 657 | WP_001718413.1 | carbon-nitrogen hydrolase family protein | - |
| COG38_RS07575 | 1419325..1419987 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87373 NZ_CP024263:c1416412-1416309 [Escherichia coli O169:H41]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87373 NZ_CP024263:1416271-1416542 [Escherichia coli O169:H41]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
