Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2362977..2363248 | Replicon | chromosome |
| Accession | NZ_CP024257 | ||
| Organism | Escherichia coli O25:H16 strain F5505-C1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2363107..2363210 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2362977..2363248 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG37_RS12120 | 2359532..2360194 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| COG37_RS12125 | 2360218..2360874 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| COG37_RS12130 | 2360976..2361206 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| COG37_RS12135 | 2361345..2361719 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| COG37_RS12140 | 2361723..2362595 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| COG37_RS12145 | 2362608..2362949 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2362977..2363248 | - | 272 | - | - | Antitoxin |
| - | 2363107..2363210 | + | 104 | - | - | Toxin |
| COG37_RS12150 | 2363345..2364001 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| COG37_RS12155 | 2364002..2364193 | - | 192 | WP_001338167.1 | YebW family protein | - |
| COG37_RS12160 | 2364298..2364534 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| COG37_RS12165 | 2364652..2366091 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87317 NZ_CP024257:2363107-2363210 [Escherichia coli O25:H16]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87317 NZ_CP024257:c2363248-2362977 [Escherichia coli O25:H16]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
