Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3634744..3635015 | Replicon | chromosome |
| Accession | NZ_CP024256 | ||
| Organism | Escherichia coli strain ATCC 43886 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3634782..3634885 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3634744..3635015 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS032_RS20525 | 3631901..3633340 | + | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CS032_RS20530 | 3633458..3633694 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CS032_RS20535 | 3633799..3633990 | + | 192 | WP_001338167.1 | YebW family protein | - |
| CS032_RS20540 | 3633991..3634647 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 3634744..3635015 | + | 272 | - | - | Antitoxin |
| - | 3634782..3634885 | - | 104 | - | - | Toxin |
| CS032_RS20545 | 3635043..3635384 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CS032_RS20550 | 3635397..3636269 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| CS032_RS20555 | 3636273..3636647 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CS032_RS20560 | 3636786..3637016 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CS032_RS20565 | 3637118..3637774 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CS032_RS20570 | 3637798..3638460 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87300 NZ_CP024256:c3634885-3634782 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87300 NZ_CP024256:3634744-3635015 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
