Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4314507..4314778 | Replicon | chromosome |
| Accession | NZ_CP024243 | ||
| Organism | Escherichia coli O128:H27 strain 90-9281 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4314637..4314740 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4314507..4314778 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG34_RS22340 | 4311062..4311724 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| COG34_RS22345 | 4311748..4312404 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| COG34_RS22350 | 4312506..4312736 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| COG34_RS22355 | 4312875..4313249 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| COG34_RS22360 | 4313253..4314125 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| COG34_RS22365 | 4314138..4314479 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4314507..4314778 | - | 272 | - | - | Antitoxin |
| - | 4314637..4314740 | + | 104 | - | - | Toxin |
| COG34_RS22370 | 4314875..4315531 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| COG34_RS22375 | 4315532..4315723 | - | 192 | WP_001296140.1 | YebW family protein | - |
| COG34_RS22380 | 4315828..4316064 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| COG34_RS22385 | 4316182..4317621 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87240 NZ_CP024243:4314637-4314740 [Escherichia coli O128:H27]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87240 NZ_CP024243:c4314778-4314507 [Escherichia coli O128:H27]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
