Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 928701..928972 | Replicon | chromosome |
| Accession | NZ_CP024240 | ||
| Organism | Escherichia coli O114:H49 strain 90-9280 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 928739..928842 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 928701..928972 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG33_RS05000 | 925858..927297 | + | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| COG33_RS05005 | 927415..927651 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| COG33_RS05010 | 927756..927947 | + | 192 | WP_001338167.1 | YebW family protein | - |
| COG33_RS05015 | 927948..928604 | - | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| - | 928701..928972 | + | 272 | - | - | Antitoxin |
| - | 928739..928842 | - | 104 | - | - | Toxin |
| COG33_RS05020 | 929000..929341 | - | 342 | WP_000976492.1 | YebY family protein | - |
| COG33_RS05025 | 929354..930226 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| COG33_RS05030 | 930230..930604 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| COG33_RS05035 | 930743..930973 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| COG33_RS05040 | 931075..931731 | + | 657 | WP_000011669.1 | carbon-nitrogen hydrolase family protein | - |
| COG33_RS05045 | 931755..932417 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87199 NZ_CP024240:c928842-928739 [Escherichia coli O114:H49]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87199 NZ_CP024240:928701-928972 [Escherichia coli O114:H49]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
