Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 739049..739320 | Replicon | chromosome |
| Accession | NZ_CP024239 | ||
| Organism | Escherichia coli O15:H11 strain 90-9272 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 739087..739190 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 739049..739320 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG31_RS05910 | 736206..737645 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| COG31_RS05915 | 737763..737999 | + | 237 | WP_001338166.1 | YebV family protein | - |
| COG31_RS05920 | 738104..738295 | + | 192 | WP_001338167.1 | YebW family protein | - |
| COG31_RS05925 | 738296..738952 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 739049..739320 | + | 272 | - | - | Antitoxin |
| - | 739087..739190 | - | 104 | - | - | Toxin |
| COG31_RS05930 | 739348..739689 | - | 342 | WP_000976472.1 | YebY family protein | - |
| COG31_RS05935 | 739702..740573 | - | 872 | Protein_744 | copper homeostasis membrane protein CopD | - |
| COG31_RS05940 | 740577..740951 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| COG31_RS05945 | 741090..741320 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| COG31_RS05950 | 741422..742078 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| COG31_RS05955 | 742102..742764 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87179 NZ_CP024239:c739190-739087 [Escherichia coli O15:H11]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87179 NZ_CP024239:739049-739320 [Escherichia coli O15:H11]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
