Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 300013..300284 | Replicon | chromosome |
| Accession | NZ_CP024228 | ||
| Organism | Escherichia coli O25:NM strain 2014EL-1343-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 300143..300246 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 300013..300284 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3411_RS01575 | 296568..297230 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| A3411_RS01580 | 297254..297910 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| A3411_RS01585 | 298012..298242 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A3411_RS01590 | 298381..298755 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| A3411_RS01595 | 298759..299631 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| A3411_RS01600 | 299644..299985 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 300013..300284 | - | 272 | - | - | Antitoxin |
| - | 300143..300246 | + | 104 | - | - | Toxin |
| A3411_RS01605 | 300381..301037 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| A3411_RS01610 | 301038..301229 | - | 192 | WP_001338167.1 | YebW family protein | - |
| A3411_RS01615 | 301334..301570 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| A3411_RS01620 | 301688..303127 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87117 NZ_CP024228:300143-300246 [Escherichia coli O25:NM]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87117 NZ_CP024228:c300284-300013 [Escherichia coli O25:NM]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
