Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2869187..2869458 | Replicon | chromosome |
| Accession | NZ_CP024155 | ||
| Organism | Escherichia coli strain 14EC047 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2869225..2869328 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2869187..2869458 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR540_RS14560 | 2866344..2867783 | + | 1440 | WP_001721450.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CR540_RS14565 | 2867901..2868137 | + | 237 | WP_001295499.1 | YebV family protein | - |
| CR540_RS14570 | 2868242..2868433 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CR540_RS14575 | 2868434..2869090 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2869187..2869458 | + | 272 | - | - | Antitoxin |
| - | 2869225..2869328 | - | 104 | - | - | Toxin |
| CR540_RS14580 | 2869486..2869827 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CR540_RS14585 | 2869840..2870712 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| CR540_RS14590 | 2870716..2871090 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CR540_RS14595 | 2871229..2871459 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CR540_RS14600 | 2871561..2872217 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| CR540_RS14605 | 2872241..2872903 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T87000 NZ_CP024155:c2869328-2869225 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT87000 NZ_CP024155:2869187-2869458 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
