Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2687616..2687887 | Replicon | chromosome |
| Accession | NZ_CP024147 | ||
| Organism | Escherichia coli strain 14EC033 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2687654..2687757 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2687616..2687887 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR539_RS13965 | 2684774..2686213 | + | 1440 | WP_032281045.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CR539_RS13970 | 2686330..2686566 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CR539_RS13975 | 2686671..2686862 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CR539_RS13980 | 2686863..2687519 | - | 657 | WP_032281033.1 | protein-serine/threonine phosphatase | - |
| - | 2687616..2687887 | + | 272 | - | - | Antitoxin |
| - | 2687654..2687757 | - | 104 | - | - | Toxin |
| CR539_RS13985 | 2687915..2688256 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CR539_RS13990 | 2688268..2689140 | - | 873 | WP_000879287.1 | copper homeostasis membrane protein CopD | - |
| CR539_RS13995 | 2689144..2689518 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CR539_RS14000 | 2689657..2689887 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CR539_RS14005 | 2689989..2690645 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| CR539_RS14010 | 2690669..2691331 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86954 NZ_CP024147:c2687757-2687654 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT86954 NZ_CP024147:2687616-2687887 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
