Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2128224..2128495 | Replicon | chromosome |
| Accession | NZ_CP024141 | ||
| Organism | Escherichia coli strain 14EC029 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2128354..2128457 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2128224..2128495 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR538_RS11130 | 2124779..2125441 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CR538_RS11135 | 2125465..2126121 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CR538_RS11140 | 2126223..2126453 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CR538_RS11145 | 2126592..2126966 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CR538_RS11150 | 2126970..2127842 | + | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| CR538_RS11155 | 2127855..2128196 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2128224..2128495 | - | 272 | - | - | Antitoxin |
| - | 2128354..2128457 | + | 104 | - | - | Toxin |
| CR538_RS11160 | 2128592..2129248 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| CR538_RS11165 | 2129249..2129440 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CR538_RS11170 | 2129545..2129781 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CR538_RS11175 | 2129899..2131338 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86919 NZ_CP024141:2128354-2128457 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT86919 NZ_CP024141:c2128495-2128224 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
