Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2131231..2131502 | Replicon | chromosome |
| Accession | NZ_CP024127 | ||
| Organism | Escherichia coli strain 14EC001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2131361..2131464 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2131231..2131502 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR534_RS11255 | 2127786..2128448 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CR534_RS11260 | 2128472..2129128 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| CR534_RS11265 | 2129230..2129460 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CR534_RS11270 | 2129599..2129973 | + | 375 | WP_024238488.1 | CopC domain-containing protein YobA | - |
| CR534_RS11275 | 2129977..2130849 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CR534_RS11280 | 2130862..2131203 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2131231..2131502 | - | 272 | - | - | Antitoxin |
| - | 2131361..2131464 | + | 104 | - | - | Toxin |
| CR534_RS11285 | 2131599..2132255 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| CR534_RS11290 | 2132256..2132447 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CR534_RS11295 | 2132552..2132788 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CR534_RS11300 | 2132906..2134345 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86787 NZ_CP024127:2131361-2131464 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT86787 NZ_CP024127:c2131502-2131231 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
