Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1988051..1988322 | Replicon | chromosome |
| Accession | NZ_CP024090 | ||
| Organism | Escherichia coli strain WG5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1988181..1988284 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1988051..1988322 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSR56_RS10015 | 1984606..1985268 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| CSR56_RS10020 | 1985292..1985948 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CSR56_RS10025 | 1986050..1986280 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CSR56_RS10030 | 1986419..1986793 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CSR56_RS10035 | 1986797..1987669 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| CSR56_RS10040 | 1987682..1988023 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1988051..1988322 | - | 272 | - | - | Antitoxin |
| - | 1988181..1988284 | + | 104 | - | - | Toxin |
| CSR56_RS10045 | 1988419..1989075 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| CSR56_RS10050 | 1989076..1989267 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CSR56_RS10055 | 1989372..1989608 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CSR56_RS10060 | 1989726..1991165 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86695 NZ_CP024090:1988181-1988284 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT86695 NZ_CP024090:c1988322-1988051 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
