Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2184496..2184767 | Replicon | chromosome |
| Accession | NZ_CP024056 | ||
| Organism | Escherichia coli strain SMN197SH3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2184626..2184729 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2184496..2184767 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRT55_RS12805 | 2181051..2181713 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CRT55_RS12810 | 2181737..2182393 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| CRT55_RS12815 | 2182495..2182725 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CRT55_RS12820 | 2182864..2183238 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CRT55_RS12825 | 2183242..2184114 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CRT55_RS12830 | 2184127..2184468 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2184496..2184767 | - | 272 | - | - | Antitoxin |
| - | 2184626..2184729 | + | 104 | - | - | Toxin |
| CRT55_RS12835 | 2184864..2185520 | + | 657 | WP_000812722.1 | protein-serine/threonine phosphatase | - |
| CRT55_RS12840 | 2185521..2185712 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CRT55_RS12845 | 2185817..2186053 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CRT55_RS12850 | 2186171..2187610 | - | 1440 | WP_024226338.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86642 NZ_CP024056:2184626-2184729 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT86642 NZ_CP024056:c2184767-2184496 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
