Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5068582..5068727 | Replicon | chromosome |
| Accession | NZ_CP024038 | ||
| Organism | Klebsiella pneumoniae strain QS17-0029 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5068589..5068691 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5068582..5068727 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR230_RS25675 | 5064113..5065546 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CR230_RS25680 | 5065662..5065901 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CR230_RS25685 | 5065999..5066190 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CR230_RS25690 | 5066187..5066840 | - | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| CR230_RS25695 | 5066997..5067965 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CR230_RS29065 | 5068070..5068213 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 5068582..5068727 | + | 146 | - | - | Antitoxin |
| - | 5068589..5068691 | - | 103 | - | - | Toxin |
| CR230_RS25705 | 5068850..5069188 | - | 339 | WP_009307539.1 | YebY family protein | - |
| CR230_RS25710 | 5069205..5070074 | - | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| CR230_RS25715 | 5070078..5070452 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CR230_RS25720 | 5070565..5070795 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CR230_RS25725 | 5070874..5071533 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CR230_RS25730 | 5071537..5073597 | - | 2061 | WP_094083900.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T86605 NZ_CP024038:c5068691-5068589 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT86605 NZ_CP024038:5068582-5068727 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
