Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/-
Location 1572152..1572788 Replicon chromosome
Accession NZ_CP024011
Organism Acinetobacter sp. LoGeW2-3

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag BS636_RS07560 Protein ID WP_099338212.1
Coordinates 1572402..1572788 (+) Length 129 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag BS636_RS07555 Protein ID WP_099339625.1
Coordinates 1572152..1572409 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BS636_RS07535 1567627..1568634 + 1008 WP_004809777.1 DNA-directed RNA polymerase subunit alpha -
BS636_RS07540 1568653..1569018 + 366 WP_004786886.1 50S ribosomal protein L17 -
BS636_RS07545 1569236..1570741 + 1506 WP_099338210.1 NAD(P)/FAD-dependent oxidoreductase -
BS636_RS07550 1570803..1571975 - 1173 WP_099338211.1 acyl-CoA dehydrogenase family protein -
BS636_RS07555 1572152..1572409 + 258 WP_099339625.1 succinate dehydrogenase assembly factor 2 Antitoxin
BS636_RS07560 1572402..1572788 + 387 WP_099338212.1 hypothetical protein Toxin
BS636_RS07565 1573321..1574361 + 1041 WP_099338213.1 hypothetical protein -
BS636_RS07570 1574429..1575001 + 573 WP_171266074.1 rhombosortase -
BS636_RS07575 1575178..1577373 + 2196 WP_099338215.1 TRAP transporter large permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Flavinator of succinate dehydrogenase

(10-82)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 15468.41 Da        Isoelectric Point: 9.6431

>T86567 WP_099338212.1 NZ_CP024011:1572402-1572788 [Acinetobacter sp. LoGeW2-3]
MDNRCYQLKRSLLALAFQFFIFAVLMFVMYQLLPLWLWGICLVAGLIIYHLFYRKRPQIAQFEYLDGREWTITHHDQRTQ
RAQISHVIDHQAYLVVYFQHAKVPPLLIWCDQLPTQQWKSLKVLTKMI

Download         Length: 387 bp

>T86567 NZ_CP024011:1572402-1572788 [Acinetobacter sp. LoGeW2-3]
ATGGATAATCGTTGTTATCAGCTGAAACGTAGCCTGCTTGCACTTGCGTTTCAGTTTTTTATTTTTGCTGTATTAATGTT
TGTGATGTATCAGTTATTGCCCCTATGGCTATGGGGGATTTGTCTGGTTGCAGGACTGATCATCTATCATCTGTTTTATC
GCAAGCGTCCCCAGATTGCCCAGTTTGAATATCTGGATGGTCGGGAATGGACTATTACCCATCATGATCAGCGCACGCAG
CGTGCTCAGATCAGTCATGTGATTGATCATCAAGCTTATCTGGTGGTGTATTTCCAGCATGCCAAAGTACCGCCACTGCT
GATCTGGTGTGACCAGTTGCCAACACAACAATGGAAGTCACTGAAAGTCCTCACGAAAATGATCTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 10328.76 Da        Isoelectric Point: 4.4996

>AT86567 WP_099339625.1 NZ_CP024011:1572152-1572409 [Acinetobacter sp. LoGeW2-3]
MTEDISLEERKVIYRARRGLKEIDVYFDPYVKNYYLTAEPFEKEMFAELVAQEDPDLLDWFMEVSEPPRPELREFINKLK
HYVHG

Download         Length: 258 bp

>AT86567 NZ_CP024011:1572152-1572409 [Acinetobacter sp. LoGeW2-3]
ATGACTGAAGACATCAGCCTGGAAGAGCGTAAAGTGATTTACCGCGCACGTCGTGGTCTCAAAGAGATAGATGTGTATTT
TGATCCCTATGTCAAAAACTACTATTTGACAGCAGAACCATTTGAAAAAGAAATGTTTGCTGAGCTGGTAGCGCAGGAAG
ACCCGGACCTGCTGGACTGGTTTATGGAAGTTTCTGAGCCGCCACGTCCTGAATTACGTGAGTTTATTAATAAGCTTAAA
CATTACGTTCATGGATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References