Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3274820..3274965 | Replicon | chromosome |
| Accession | NZ_CP023963 | ||
| Organism | Klebsiella aerogenes strain FDAARGOS_363 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3274827..3274930 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3274820..3274965 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRN78_RS16020 | 3270121..3270639 | + | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
| CRN78_RS16025 | 3270657..3271406 | + | 750 | WP_015366013.1 | molecular chaperone | - |
| CRN78_RS16030 | 3271409..3273733 | + | 2325 | WP_032711928.1 | fimbrial biogenesis outer membrane usher protein | - |
| CRN78_RS16035 | 3273746..3274699 | + | 954 | WP_074164451.1 | spore coat U domain-containing protein | - |
| - | 3274820..3274965 | + | 146 | - | - | Antitoxin |
| - | 3274827..3274930 | - | 104 | - | - | Toxin |
| CRN78_RS16040 | 3275088..3275429 | - | 342 | WP_015705946.1 | YebY family protein | - |
| CRN78_RS16045 | 3275443..3276312 | - | 870 | WP_032708610.1 | copper homeostasis membrane protein CopD | - |
| CRN78_RS16050 | 3276316..3276690 | - | 375 | WP_042893410.1 | CopC domain-containing protein YobA | - |
| CRN78_RS16055 | 3276825..3277055 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| CRN78_RS16060 | 3277135..3277794 | + | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| CRN78_RS16065 | 3277797..3279857 | - | 2061 | WP_086557470.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86511 NZ_CP023963:c3274930-3274827 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT86511 NZ_CP023963:3274820-3274965 [Klebsiella aerogenes]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
