Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1355094..1355365 | Replicon | chromosome |
| Accession | NZ_CP023960 | ||
| Organism | Escherichia coli strain FDAARGOS_448 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1355132..1355235 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1355094..1355365 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRN68_RS08360 | 1352251..1353690 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CRN68_RS08365 | 1353808..1354044 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CRN68_RS08370 | 1354149..1354340 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CRN68_RS08375 | 1354341..1354997 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 1355094..1355365 | + | 272 | - | - | Antitoxin |
| - | 1355132..1355235 | - | 104 | - | - | Toxin |
| CRN68_RS08380 | 1355393..1355734 | - | 342 | WP_001520705.1 | YebY family protein | - |
| CRN68_RS08385 | 1355747..1356619 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| CRN68_RS08390 | 1356623..1356997 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| CRN68_RS08395 | 1357136..1357366 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CRN68_RS08400 | 1357468..1358124 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| CRN68_RS08405 | 1358148..1358810 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86464 NZ_CP023960:c1355235-1355132 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT86464 NZ_CP023960:1355094-1355365 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
