Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3448220..3448491 | Replicon | chromosome |
| Accession | NZ_CP023899 | ||
| Organism | Escherichia coli strain FDAARGOS_433 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3448350..3448453 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3448220..3448491 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRN16_RS19095 | 3444775..3445437 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CRN16_RS19100 | 3445461..3446117 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CRN16_RS19105 | 3446219..3446449 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CRN16_RS19110 | 3446588..3446962 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CRN16_RS19115 | 3446966..3447838 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CRN16_RS19120 | 3447851..3448192 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 3448220..3448491 | - | 272 | - | - | Antitoxin |
| - | 3448350..3448453 | + | 104 | - | - | Toxin |
| CRN16_RS19125 | 3448588..3449244 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| CRN16_RS19130 | 3449245..3449436 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CRN16_RS19135 | 3449541..3449777 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CRN16_RS19140 | 3449895..3451334 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86330 NZ_CP023899:3448350-3448453 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT86330 NZ_CP023899:c3448491-3448220 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
