Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3998522..3998793 | Replicon | chromosome |
| Accession | NZ_CP023815 | ||
| Organism | Escherichia coli strain IMT16316 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3998652..3998755 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3998522..3998793 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRI72_RS20070 | 3995077..3995739 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CRI72_RS20075 | 3995763..3996419 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| CRI72_RS20080 | 3996521..3996751 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CRI72_RS20085 | 3996890..3997264 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| CRI72_RS20090 | 3997268..3998140 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| CRI72_RS20095 | 3998153..3998494 | + | 342 | WP_098944960.1 | YebY family protein | - |
| - | 3998522..3998793 | - | 272 | - | - | Antitoxin |
| - | 3998652..3998755 | + | 104 | - | - | Toxin |
| CRI72_RS20100 | 3998890..3999546 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| CRI72_RS20105 | 3999547..3999738 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CRI72_RS20110 | 3999843..4000079 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CRI72_RS20115 | 4000197..4001636 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T86039 NZ_CP023815:3998652-3998755 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT86039 NZ_CP023815:c3998793-3998522 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
