Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4088345..4088490 | Replicon | chromosome |
| Accession | NZ_CP023722 | ||
| Organism | Klebsiella pneumoniae strain TVGHCRE225 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4088352..4088454 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4088345..4088490 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO233_RS20820 | 4083877..4085310 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CO233_RS20825 | 4085426..4085665 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CO233_RS20830 | 4085763..4085954 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CO233_RS20835 | 4085951..4086604 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CO233_RS20840 | 4086761..4087729 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CO233_RS31720 | 4087834..4087977 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4088345..4088490 | + | 146 | - | - | Antitoxin |
| - | 4088352..4088454 | - | 103 | - | - | Toxin |
| CO233_RS20850 | 4088613..4088951 | - | 339 | WP_002911404.1 | YebY family protein | - |
| CO233_RS20855 | 4088968..4089837 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| CO233_RS20860 | 4089841..4090215 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CO233_RS20865 | 4090328..4090558 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CO233_RS20870 | 4090637..4091296 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CO233_RS20875 | 4091300..4093360 | - | 2061 | WP_110437850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T85949 NZ_CP023722:c4088454-4088352 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT85949 NZ_CP023722:4088345-4088490 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
