Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3444825..3444930 Replicon chromosome
Accession NZ_CP023706
Organism Edwardsiella tarda strain KC-Pc-HB1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3444828..3444930 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3444825..3444930 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 3444825..3444930 + 106 - - Antitoxin
- 3444828..3444930 - 103 - - Toxin
CPU03_RS16080 3445224..3446738 + 1515 WP_047059848.1 EAL domain-containing protein -
CPU03_RS16085 3446848..3447312 + 465 WP_071526326.1 hypothetical protein -
CPU03_RS16090 3447420..3448145 - 726 WP_005294253.1 hypothetical protein -
CPU03_RS16095 3448334..3448798 - 465 WP_097364639.1 NifB/NifX family molybdenum-iron cluster-binding protein -
CPU03_RS16100 3448811..3449089 - 279 WP_005286287.1 DUF134 domain-containing protein -
CPU03_RS16105 3449158..3449784 - 627 WP_005286281.1 response regulator transcription factor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 3376033..3447312 71279


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T85923 NZ_CP023706:c3444930-3444828 [Edwardsiella tarda]
GGCAAGGCGATCCATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCACAAGAGCCATTCCCCTAGACCTGATACA
GGAATCGTGTCAGGTCTTTTTTT

Antitoxin


Download         Length: 106 bp

>AT85923 NZ_CP023706:3444825-3444930 [Edwardsiella tarda]
GATAAAAAAAGACCTGACACGATTCCTGTATCAGGTCTAGGGGAATGGCTCTTGTGGAGAGCCGTGCGCTAAAAGTTGGC
ATTATGCAGGCATGGATCGCCTTGCC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References